Read Visium HD Example Data from GitHub
Source:R/core_optimal_K.R
read_example_visium_hd_kidney_data.RdDownloads and loads Visium HD spatial transcriptomics data from a GitHub repository. Includes coordinates, deconvolution, effective niche covariates, library sizes, and gene counts.
Value
A list containing:
- coords
Matrix of spatial coordinates.
- niche
Effective niche covariate matrix.
- deconv
Cell type deconvolution matrix.
- counts
Gene expression count matrix.
Examples
if (FALSE) { # \dontrun{
data <- read_example_visium_hd_kidney_data()
str(data)
} # }